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Development status

Source: vignettes/development_status.Rmd
development_status.Rmd

The following tables show the status of the implementation of each feature in the package:

HDF5AnnData

Slot Getter Getter test Setter Setter test
layers ✓ ✓ ✓ ✓
obs ✓ ✓ ✓ ✓
obs_names ✓ ✓ ✓ ✓
obsm ✓ ✓
obsp ✓ ✓
uns ✓ ✓
var ✓ ✓ ✓ ✓
var_names ✓ ✓ ✓ ✓
varm ✓ ✓
varp ✓ ✓
X ✓ ✓ ✓ ✓

InMemoryAnnData

Slot Getter Getter test Setter Setter test
layers ✓ ✓ ✓ ✓
obs ✓ ✓ ✓ ✓
obs_names ✓ ✓ ✓ ✓
obsm ✓ ✓
obsp ✓ ✓
uns ✓ ✓
var ✓ ✓ ✓ ✓
var_names ✓ ✓ ✓ ✓
varm ✓ ✓
varp ✓ ✓
X ✓ ✓ ✓ ✓

Seurat

Slot Getter Getter test Setter Setter test
layers ✓ ✓ ✓
obs ✓ ✓ ✓
obs_names ✓ ✓ ✓
obsm ~ ~ ✓
obsp ~ ~
uns ✓ ~
var ✓ ✓ ✓
var_names ✓ ✓ ✓
varm ~ ~ ✓
varp ✓ ~
X ✓ ✓ ✓

SingleCellExperiment

Slot Getter Getter test Setter Setter test
layers ✓ ✓ ✓
obs ✓ ✓ ✓ ✓
obs_names ✓ ✓ ✓ ✓
obsm
obsp
uns
var ✓ ✓ ✓ ✓
var_names ✓ ✓ ✓ ✓
varm
varp
X ✓ ✓ ✓ ✓