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Convert a Seurat object to an AnnData object

Source: R/from_Seurat.R
from_Seurat.Rd

[Deprecated]

This function is deprecated, use as_AnnData() instead

Usage

from_Seurat(
  seurat_obj,
  assay_name = NULL,
  x_mapping = NULL,
  layers_mapping = TRUE,
  obs_mapping = TRUE,
  var_mapping = TRUE,
  obsm_mapping = TRUE,
  varm_mapping = TRUE,
  obsp_mapping = TRUE,
  varp_mapping = TRUE,
  uns_mapping = TRUE,
  output_class = c("InMemory", "HDF5AnnData"),
  ...
)

Arguments

seurat_obj

See as_AnnData()

assay_name

See as_AnnData()

x_mapping

See as_AnnData()

layers_mapping

See as_AnnData()

obs_mapping

See as_AnnData()

var_mapping

See as_AnnData()

obsm_mapping

See as_AnnData()

varm_mapping

See as_AnnData()

obsp_mapping

See as_AnnData()

varp_mapping

See as_AnnData()

uns_mapping

See as_AnnData()

output_class

See as_AnnData()

...

See as_AnnData()

Value

An AnnData object