Convert a SingleCellExperiment object to an AnnData object
Source:R/from_SingleCellExperiment.R
from_SingleCellExperiment.Rd
This function is deprecated, use as_AnnData()
instead
Usage
from_SingleCellExperiment(
sce,
x_mapping = NULL,
layers_mapping = TRUE,
obs_mapping = TRUE,
var_mapping = TRUE,
obsm_mapping = TRUE,
varm_mapping = TRUE,
obsp_mapping = TRUE,
varp_mapping = TRUE,
uns_mapping = TRUE,
output_class = c("InMemory", "HDF5AnnData"),
...
)
Arguments
- sce
See
as_AnnData()
- x_mapping
See
as_AnnData()
- layers_mapping
See
as_AnnData()
- obs_mapping
See
as_AnnData()
- var_mapping
See
as_AnnData()
- obsm_mapping
See
as_AnnData()
- varm_mapping
See
as_AnnData()
- obsp_mapping
See
as_AnnData()
- varp_mapping
See
as_AnnData()
- uns_mapping
See
as_AnnData()
- output_class
See
as_AnnData()
- ...
See
as_AnnData()