Convert an AnnData to a ReticulateAnnData

Convert another AnnData object to a ReticulateAnnData object

Usage

as_ReticulateAnnData(adata)

Arguments

adata

An AnnData object to be converted to ReticulateAnnData

Value

A ReticulateAnnData object with the same data as the input AnnData object

See also

Other object converters: as_AnnData(), as_HDF5AnnData(), as_InMemoryAnnData(), as_Seurat(), as_SingleCellExperiment(), reticulate-helpers

Examples

# \donttest{
# Requires Python anndata to be installed
if (requireNamespace("reticulate", quietly = TRUE) &&
      reticulate::py_module_available("anndata")) {
  ad <- AnnData(
    X = matrix(1:5, 3L, 5L),
    layers = list(
      A = matrix(5:1, 3L, 5L),
      B = matrix(letters[1:5], 3L, 5L)
    ),
    obs = data.frame(row.names = LETTERS[1:3], cell = 1:3),
    var = data.frame(row.names = letters[1:5], gene = 1:5)
  )
  ad$as_ReticulateAnnData()
}
#> Downloading uv...
#> Done!
# }