Convert an AnnData to an InMemoryAnnData

Convert another AnnData object to an InMemoryAnnData object

Arguments

adata

An AnnData object to be converted to InMemoryAnnData

Value

An InMemoryAnnData object with the same data as the input AnnData object

See also

Other object converters: as_AnnData(), as_HDF5AnnData, as_Seurat, as_SingleCellExperiment

Examples

ad <- AnnData(
  X = matrix(1:5, 3L, 5L),
  layers = list(
    A = matrix(5:1, 3L, 5L),
    B = matrix(letters[1:5], 3L, 5L)
  ),
  obs = data.frame(row.names = LETTERS[1:3], cell = 1:3),
  var = data.frame(row.names = letters[1:5], gene = 1:5)
)
ad$as_InMemoryAnnData()
#> AnnData object with n_obs × n_vars = 3 × 5
#>     obs: 'cell'
#>     var: 'gene'
#>     layers: 'A', 'B'